It used to be that all of your tweets and @replies were shown in your timeline whenever you, or anyone else clicked on to your timeline, but then Twitter made some modifications...
Whereas before you could just click on
Tweets and it would show you everything; now you have the choice of
Tweets (which will show you everything you have tweeted yourself, or retweeted) or
Tweets and Replies (as before, but also with your "@replies" - the original view).
Personally I prefer this view as it used to be annoying when you would go to someone's timeline and have to scroll through all of their @replies, which don't really have any relevance to anyone but the person they are directed to.
As Twitter develops it continues to evolve and improve, and personally, I think this feature is a big improvement.